Recent questions tagged bioinformatics

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bioinformatics - Star index generation - 'std::bad_alloc' error

I was trying to generate a genome index using STAR index for mutant library 99,50 hours post fertilization ... .com/questions/65866214/star-index-generation-stdbad-alloc-error...

asked Oct 7, 2021 in Technique[技术] by 深蓝 (71.8m points)

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bioinformatics - How to recover alignment from edit distance in R?

I've been trying to implement my own solution to recover the alignment of two strings with edit distance. For ... /66059512/how-to-recover-alignment-from-edit-distance-in-r...

asked Oct 6, 2021 in Technique[技术] by 深蓝 (71.8m points)

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bioinformatics - How to recover alignment from edit distance in R?

I've been trying to implement my own solution to recover the alignment of two strings with edit distance. For ... /66059512/how-to-recover-alignment-from-edit-distance-in-r...

asked Oct 6, 2021 in Technique[技术] by 深蓝 (71.8m points)

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426 views

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bioinformatics - Phylogenetic Tree- full ITS v. partial ITS

I hope to make a single phylogenetic tree by comparing reads that cover ITS 1 or ITS 2 to reads that cover both regions ( ... ....... _____. Here is an image of the alignment:...

asked Feb 19, 2021 in Technique[技术] by 深蓝 (71.8m points)

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bioinformatics - Finding overlap in ranges with R

I have two data.frames each with three columns: chrom, start & stop, let's call them rangesA and rangesB. For each ... way to do this than looping over this construct. Any ideas?...

asked Jan 27, 2021 in Technique[技术] by 深蓝 (71.8m points)

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