The following applies for 'proto2' syntax, not 'proto3' :
The notion of a field being set or not is a core feature of Protobuf. If you set a field to a value (any value), then the corresponding has_xxx
method must return true, otherwise you have a bug in the API.
If you do not set a field and then serialize the message, no value is sent for that field. The receiving side will parse the message, discover which values where included, and set the corresponding "has_xxx" values.
Exactly how this is implemented in the wire-format is documented here: http://code.google.com/apis/protocolbuffers/docs/encoding.html. The short version is that message are encoded as a sequence of key-value pairs, and only fields which are explicitly set are included in the encoded message.
Default values only come into play when you attempt to read an unset field.
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