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r - ggplot does not show legend in geom_histogram

I have this code

ggplot()
+ geom_histogram(aes(x=V1, y=(..count..)/sum(..count..)), fill="red", alpha=.4, colour="red", data=coding, stat = "bin", binwidth = 30)
+ geom_histogram(aes(x=V1,y=(..count..)/sum(..count..)), fill="blue", alpha=.4, colour="blue", data=lncrna, stat = "bin", binwidth = 30)
+ coord_cartesian(xlim = c(0, 2000))
+ xlab("Size (nt)")
+ ylab("Percentage (%)")
+ geom_vline(data=cdf, aes(xintercept=rating.mean, colour=Labels), linetype="dashed", size=1)

that produces a beautiful histogram without legend:

enter image description here

In every post I visit with the same problem, they say to put color inside aes. nevertheless, this does not give any legend.

I tried:

ggplot() + geom_histogram(aes(x=V1, y=(..count..)/sum(..count..),color="red", fill="red"), fill="red", alpha=.4, colour="red", data=coding, stat = "bin", binwidth = 30)
+ geom_histogram(aes(x=V1,y=(..count..)/sum(..count..), color="blue", fill="blue"), fill="blue", alpha=.4, colour="blue", data=lncrna, stat = "bin", binwidth = 30)
+ coord_cartesian(xlim = c(0, 2000))
+ xlab("Size (nt)")
+ ylab("Percentage (%)")
+ geom_vline(data=cdf, aes(xintercept=rating.mean, colour=Labels), linetype="dashed", size=1)

without success.

How can I put a legend in my graph?

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1 Answer

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by (71.8m points)

If you don't want to put the data in one data.frame, you can do this:

set.seed(42)
coding <- data.frame(V1=rnorm(1000))
lncrna <- data.frame(V1=rlnorm(1000))


library(ggplot2)
ggplot() + 
  geom_histogram(aes(x=V1, y=(..count..)/sum(..count..), fill="r", colour="r"), alpha=.4, data=coding, stat = "bin") +
  geom_histogram(aes(x=V1,y=(..count..)/sum(..count..), fill="b", colour="b"), alpha=.4, data=lncrna, stat = "bin") +
  scale_colour_manual(name="group", values=c("r" = "red", "b"="blue"), labels=c("b"="blue values", "r"="red values")) +
  scale_fill_manual(name="group", values=c("r" = "red", "b"="blue"), labels=c("b"="blue values", "r"="red values"))

enter image description here


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