The following excerpt allows using OAEP with SHA256 for both the MGF and hash function. Tested with OpenSSL 1.0.2L
int flags = CMS_BINARY | CMS_PARTIAL | CMS_KEY_PARAM;
cms = CMS_encrypt(NULL, in, cipher, flags)
ri = CMS_add1_recipient_cert(cms, cert, flags);
pctx = CMS_RecipientInfo_get0_pkey_ctx(ri);
EVP_PKEY_CTX_set_rsa_padding(pctx, RSA_PKCS1_OAEP_PADDING);
EVP_PKEY_CTX_set_rsa_oaep_md(pctx, EVP_sha256());
EVP_PKEY_CTX_set_rsa_mgf1_md(pctx, EVP_sha256());
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