This builds that matrix although the print method does not display it in the manner you imagined:
matrix( list(c(1,2,4), c(NULL), c(1,2), c(3,4,5,6), c(1), c(1,3)), 2,3)
#---------
[,1] [,2] [,3]
[1,] Numeric,3 Numeric,2 1
[2,] NULL Numeric,4 Numeric,2
Inspect the first element:
> Mlist <- matrix( list(c(1,2,4), c(NULL), c(1,2), c(3,4,5,6), c(1), c(1,3)), 2,3)
> Mlist[1,1]
[[1]]
[1] 1 2 4
> is.matrix(Mlist)
[1] TRUE
> class( Mlist[1,1] )
[1] "list"
Demonstration of creating "matrix of lists" from a list:
> will.become.a.matrix <- list(c(1,2,4), c(NULL), c(1,2), c(3,4,5,6), c(1), c(1,3))
> is.matrix(will.become.a.matrix)
[1] FALSE
> dim(will.become.a.matrix) <- c(2,3)
> is.matrix(will.become.a.matrix)
[1] TRUE
> dim(will.become.a.matrix)
[1] 2 3
> class(will.become.a.matrix[1,1])
[1] "list"
Further requested demonstration:
A<- list(); F=list() E=list()
A[1]<-c(3) ; F[[1]]<-numeric(0); E[[1]]<-numeric(0)
A[2]<-c(1) ; F[2]<-c(1) ; E[2]<-c(1)
A[3]<-c(1) ; F[3]<-c(2) ; E[[3]]<-numeric(0)
A[[4]]<-list(1,3) ;F[[4]]<-numeric(0) ; E[[4]]<-numeric(0)
A[5]<-c(4) ; F[5]<-c(4) ; E[5]<-c(4)
Mlist= c(A,F,E)
M <- matrix(Mlist, length(A), 3)
#=====================================
> M
[,1] [,2] [,3]
[1,] 3 Numeric,0 Numeric,0
[2,] 1 1 1
[3,] 1 2 Numeric,0
[4,] List,2 Numeric,0 Numeric,0
[5,] 4 4 4
You asked (in comments) "....is there a way to define number of column and rows , but not the element itself because they are unknown?"
Answered (initially in comments)
b<-matrix(rep(list(), 6),nrow = 2, ncol =3)
#.... then replace the NULL items with values.
# Need to use "[[": for assignment (which your 'Update 1' did not
# ....and your Update2 only did for some but not all of the assignments.)
b[[1]] <- c(1,2,3,4)