Disclaimer: I am a Data Scientist at atoti.
One quick fix I found for the above problem is:
Instead of restarting the whole kernel, you can simply recreate the session i.e. run the below cell again, and then you can create the store with the same CSV file. (The step you usually do after importing atoti.)
# Tell atoti to load the database containing the UI dashboards
config = create_config(metadata_db="./metadata.db")
session = atoti.create_session(config=config)
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