Welcome to OStack Knowledge Sharing Community for programmer and developer-Open, Learning and Share
Welcome To Ask or Share your Answers For Others

Categories

0 votes
893 views
in Technique[技术] by (71.8m points)

python - Calculating scale/dispersion of Gamma GLM using statsmodels

I'm having trouble obtaining the dispersion parameter of simulated data using statsmodels' GLM function.

import statsmodels.api as sm
import matplotlib.pyplot as plt 
import scipy.stats as stats 
import numpy as np

np.random.seed(1)

# Generate data
x=np.random.uniform(0, 100,50000)
x2 = sm.add_constant(x)
a = 0.5
b = 0.2
y_true = 1/(a+(b*x))
# Add error 
scale = 2 # the scale parameter I'm trying to obtain
shape = y_true/scale # given that, for Gamma, mu = scale*shape
y = np.random.gamma(shape=shape, scale=scale)

# Run model
model = sm.GLM(y, x2, family=sm.families.Gamma()).fit() 

model.summary()

Here's the summary from above: glm output

Note that the coefficient estimates are correct (0.5 and 0.2), but the scale (21.995) is way off the scale I set (2).

Can someone point out what it is I'm misunderstanding/doing wrong? Thanks!

See Question&Answers more detail:os

与恶龙缠斗过久,自身亦成为恶龙;凝视深渊过久,深渊将回以凝视…
Welcome To Ask or Share your Answers For Others

1 Answer

0 votes
by (71.8m points)

As Josef noted in the comments, statsmodels uses a different kind of parameterization.


与恶龙缠斗过久,自身亦成为恶龙;凝视深渊过久,深渊将回以凝视…
Welcome to OStack Knowledge Sharing Community for programmer and developer-Open, Learning and Share
Click Here to Ask a Question

...